papers-we-love_papers-we-love/bioinformatics/README.md
FaresSalem 37dbc93c33
Adding Bioinformatics topic (#600)
* Create README.md

* Rename security/HW Security/README.md to security/hardware_security/README.md

* Rearranging files

* Rearranging files

* Delete sok-eternal-war-in-memory.pdf

* Moving sok-eternal-war-in-memory.pdf

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Updating the link for "Internet Census via Insecure Routers"

* Add Hardware Security subsection

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* fix the Shouji paper link
2020-03-29 13:13:49 -04:00

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Bioinformatics
===========
## Sequence Analysis
* [SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs (2019)](https://arxiv.org/abs/1910.09020v2)
* [Shouji: a fast and efficient pre-alignment filter for sequence alignment (2019)](https://arxiv.org/ftp/arxiv/papers/1809/1809.07858.pdf)
* [Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping (2015)](https://doi.org/10.1093/bioinformatics/btu856)