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gristlabs_grist-core/sandbox/grist/parse_data.py

300 lines
10 KiB

(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
"""
This module implements a way to detect and convert types that's better than messytables (at least
in some relevant cases).
It has a simple interface: get_table_data(row_set) which returns a list of columns, each a
dictionary with "type" and "data" fields, where "type" is a Grist type string, and data is a list
of values. All "data" lists will have the same length.
"""
from imports import dateguess
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
import datetime
import logging
import re
import messytables
import moment # TODO grist internal libraries might not be available to plugins in the future.
import dateutil.parser as date_parser
import six
from six.moves import zip, xrange
log = logging.getLogger(__name__)
# Typecheck using type(value) instead of isinstance(value, some_type) makes parsing 25% faster
# pylint:disable=unidiomatic-typecheck
# Our approach to type detection is different from that of messytables.
# We first go through each cell in a sample of rows, trying to convert it to each of the basic
# types, and keep a count of successes for each. We use the counts to decide the basic types (e.g.
# numeric vs text). Then we go through the full data set converting to the chosen basic type.
# During this process, we keep counts of suitable Grist types to consider (e.g. Int vs Numeric).
# We use those counts to produce the selected Grist type at the end.
class BaseConverter(object):
@classmethod
def test(cls, value):
try:
cls.convert(value)
return True
except Exception:
return False
@classmethod
def convert(cls, value):
"""Implement to convert imported value to a basic type."""
raise NotImplementedError()
@classmethod
def get_grist_column(cls, values):
"""
Given an array of values returned successfully by convert(), return a tuple of
(grist_type_string, grist_values), where grist_values is an array of values suitable for the
returned grist type.
"""
raise NotImplementedError()
class NumericConverter(BaseConverter):
"""Handles numeric values, including Grist types Numeric and Int."""
# A number matching this is probably an identifier of some sort. Converting it to a float will
# lose precision, so it's better not to consider it numeric.
_unlikely_float = re.compile(r'\d{17}|^0\d')
# Integers outside this range will be represented as floats. This is the limit for values that can
# be stored in a JS Int32Array.
_max_js_int = 1<<31
# The thousands separator. It should be locale-specific, but we don't currently have a way to
# detect locale from the data. (Also, the sandbox's locale module isn't fully functional.)
_thousands_sep = ','
@classmethod
def convert(cls, value):
if type(value) in six.integer_types + (float, complex):
return value
if type(value) in (str, six.text_type) and not cls._unlikely_float.search(value):
return float(value.strip().lstrip('$').replace(cls._thousands_sep, ""))
raise ValueError()
@classmethod
def _is_integer(cls, value):
ttype = type(value)
if ttype == int or (ttype == float and value.is_integer()):
return -cls._max_js_int <= value < cls._max_js_int
return False
@classmethod
def get_grist_column(cls, values):
if all(cls._is_integer(v) for v in values):
return ("Int", [int(v) for v in values])
return ("Numeric", values)
class DateParserInfo(date_parser.parserinfo):
def validate(self, res):
# Avoid this bogus combination which accepts plain numbers.
if res.day and not res.month:
return False
return super(DateParserInfo, self).validate(res)
class SimpleDateTimeConverter(BaseConverter):
"""Handles Date and DateTime values which are already instances of datetime.datetime."""
@classmethod
def convert(cls, value):
if type(value) is datetime.datetime:
return value
elif value == "":
return None
raise ValueError()
@classmethod
def _is_date(cls, value):
return value is None or value.time() == datetime.time()
@classmethod
def get_grist_column(cls, values):
grist_type = "Date" if all(cls._is_date(v) for v in values) else "DateTime"
grist_values = [(v if (v is None) else moment.dt_to_ts(v))
for v in values]
return grist_type, grist_values
class DateTimeCoverter(BaseConverter):
"""Handles dateformats by guessed format."""
def __init__(self, date_format):
self._format = date_format
def convert(self, value):
if value == "":
return None
if type(value) in (str, six.text_type):
# datetime.strptime doesn't handle %z and %Z tags in Python 2.
if '%z' in self._format or '%Z' in self._format:
return date_parser.parse(value)
else:
try:
return datetime.datetime.strptime(value, self._format)
except ValueError:
return date_parser.parse(value)
raise ValueError()
def _is_date(self, value):
return value is None or value.time() == datetime.time()
def get_grist_column(self, values):
grist_type = "Date" if all(self._is_date(v) for v in values) else "DateTime"
grist_values = [(v if (v is None) else moment.dt_to_ts(v))
for v in values]
return grist_type, grist_values
class BoolConverter(BaseConverter):
"""Handles Boolean type."""
_true_values = (1, '1', 'true', 'yes')
_false_values = (0, '0', 'false', 'no')
@classmethod
def convert(cls, value):
v = value.strip().lower() if type(value) in (str, six.text_type) else value
if v in cls._true_values:
return True
elif v in cls._false_values:
return False
raise ValueError()
@classmethod
def get_grist_column(cls, values):
return ("Bool", values)
class TextConverter(BaseConverter):
"""Fallback converter that converts everything to strings."""
@classmethod
def convert(cls, value):
return six.text_type(value)
@classmethod
def get_grist_column(cls, values):
return ("Text", values)
class ColumnDetector(object):
"""
ColumnDetector accepts calls to `add_value()`, and keeps track of successful conversions to
different basic types. At the end `get_converter()` method returns the class of the most
suitable converter.
"""
# Converters are listed in the order of preference, which is only used if two converters succeed
# on the same exact number of values. Text is always a fallback.
converters = [SimpleDateTimeConverter, BoolConverter, NumericConverter]
# If this many non-junk values or more can't be converted, fall back to text.
_text_threshold = 0.10
# Junk values: these aren't counted when deciding whether to fall back to text.
_junk_re = re.compile(r'^\s*(|-+|\?+|n/?a)\s*$', re.I)
def __init__(self):
self._counts = [0] * len(self.converters)
self._count_nonjunk = 0
self._count_total = 0
self._data = []
def add_value(self, value):
self._count_total += 1
if value is None or (type(value) in (str, six.text_type) and self._junk_re.match(value)):
return
self._data.append(value)
self._count_nonjunk += 1
for i, conv in enumerate(self.converters):
if conv.test(value):
self._counts[i] += 1
def get_converter(self):
if sum(self._counts) == 0:
# if not already guessed as int, bool or datetime then we should try to guess date pattern
str_data = [d for d in self._data if isinstance(d, six.string_types)]
data_formats = dateguess.guess_bulk(str_data, error_rate=self._text_threshold)
data_format = data_formats[0] if data_formats else None
if data_format:
return DateTimeCoverter(data_format)
# We find the max by count, and secondarily by minimum index in the converters list.
count, neg_index = max((c, -i) for (i, c) in enumerate(self._counts))
if count > 0 and count >= self._count_nonjunk * (1 - self._text_threshold):
return self.converters[-neg_index]
return TextConverter
def _guess_basic_types(rows, num_columns):
column_detectors = [ColumnDetector() for i in xrange(num_columns)]
for row in rows:
for cell, detector in zip(row, column_detectors):
detector.add_value(cell.value)
return [detector.get_converter() for detector in column_detectors]
class ColumnConverter(object):
"""
ColumnConverter converts and collects values using the passed-in converter object. At the end
`get_grist_column()` method returns a column of converted data.
"""
def __init__(self, converter):
self._converter = converter
self._all_col_values = [] # Initially this has None's for converted values
self._converted_values = [] # A list of all converted values
self._converted_indices = [] # Indices of the converted values into self._all_col_values
def convert_and_add(self, value):
# For some reason, we get 'str' type rather than 'unicode' for empty strings.
# Correct this, since all text should be unicode.
value = u"" if value == "" else value
try:
conv = self._converter.convert(value)
self._converted_values.append(conv)
self._converted_indices.append(len(self._all_col_values))
self._all_col_values.append(None)
except Exception:
self._all_col_values.append(six.text_type(value))
def get_grist_column(self):
"""
Returns a dictionary {"type": grist_type, "data": grist_value_array}.
"""
grist_type, grist_values = self._converter.get_grist_column(self._converted_values)
for i, v in zip(self._converted_indices, grist_values):
self._all_col_values[i] = v
return {"type": grist_type, "data": self._all_col_values}
def get_table_data(row_set, num_columns, num_rows=0):
converters = _guess_basic_types(row_set.sample, num_columns)
col_converters = [ColumnConverter(c) for c in converters]
for num, row in enumerate(row_set):
if num_rows and num == num_rows:
break
if num % 10000 == 0:
log.info("Processing row %d", num)
# Make sure we have a value for every column.
missing_values = len(converters) - len(row)
if missing_values > 0:
row.extend([messytables.Cell("")] * missing_values)
for cell, conv in zip(row, col_converters):
conv.convert_and_add(cell.value)
return [conv.get_grist_column() for conv in col_converters]