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gristlabs_grist-core/sandbox/grist/imports/import_xls.py

157 lines
5.5 KiB

(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
"""
This module reads a file path that is passed in using ActiveDoc.importFile()
and returns a object formatted so that it can be used by grist for a bulk add records action
"""
import csv
import logging
import os
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
import chardet
import messytables
import messytables.excel
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
import six
from six.moves import zip
import parse_data
from imports import import_utils
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
log = logging.getLogger(__name__)
def import_file(file_source, parse_options):
path = import_utils.get_path(file_source["path"])
orig_name = file_source["origName"]
parse_options, tables = parse_file(path, orig_name, parse_options)
return {"parseOptions": parse_options, "tables": tables}
# messytable is painfully un-extensible, so we have to jump through dumb hoops to override any
# behavior.
orig_dialect = messytables.CSVRowSet._dialect
def override_dialect(self):
if self.delimiter == '\t':
return csv.excel_tab
return orig_dialect.fget(self)
messytables.CSVRowSet._dialect = property(override_dialect)
def parse_file(file_path, orig_name, parse_options=None, table_name_hint=None, num_rows=None):
# pylint: disable=unused-argument
with open(file_path, "rb") as f:
try:
return parse_open_file(f, orig_name, table_name_hint=table_name_hint)
except Exception as e:
# Log the full error, but simplify the thrown error to omit the unhelpful extra args.
log.warn("import_xls parse_file failed: %s", e)
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
if six.PY2 and e.args and isinstance(e.args[0], six.string_types):
raise Exception(e.args[0])
raise
def parse_open_file(file_obj, orig_name, table_name_hint=None):
file_root, file_ext = os.path.splitext(orig_name)
table_set = messytables.any.any_tableset(file_obj, extension=file_ext, auto_detect=False)
# Messytable's encoding detection uses too small a sample, so we override it here.
if isinstance(table_set, messytables.CSVTableSet):
sample = file_obj.read(100000)
table_set.encoding = chardet.detect(sample)['encoding']
# In addition, always prefer UTF8 over ASCII.
if table_set.encoding == 'ascii':
table_set.encoding = 'utf8'
skipped_tables = 0
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
export_list = []
# A table set is a collection of tables:
for row_set in table_set.tables:
table_name = row_set.name
if isinstance(row_set, messytables.CSVRowSet):
# For csv files, we can do better for table_name by using the filename.
table_name = import_utils.capitalize(table_name_hint or
os.path.basename(file_root.decode('utf8')))
# Messytables doesn't guess whether headers are present, so we need to step in.
data_offset, headers = import_utils.headers_guess(list(row_set.sample))
else:
# Let messytables guess header names and the offset of the header.
offset, headers = messytables.headers_guess(row_set.sample)
data_offset = offset + 1 # Add the header line
# Make sure all header values are strings.
for i, header in enumerate(headers):
if not isinstance(header, six.string_types):
headers[i] = six.text_type(header)
log.debug("Guessed data_offset as %s", data_offset)
log.debug("Guessed headers as: %s", headers)
row_set.register_processor(messytables.offset_processor(data_offset))
table_data_with_types = parse_data.get_table_data(row_set, len(headers))
# Identify and remove empty columns, and populate separate metadata and data lists.
column_metadata = []
table_data = []
for col_data, header in zip(table_data_with_types, headers):
if not header and all(val == "" for val in col_data["data"]):
continue # empty column
data = col_data.pop("data")
col_data["id"] = header
column_metadata.append(col_data)
table_data.append(data)
if not table_data:
# Don't add tables with no columns.
skipped_tables += 1
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
continue
log.info("Output table %r with %d columns", table_name, len(column_metadata))
for c in column_metadata:
log.debug("Output column %s", c)
export_list.append({
"table_name": table_name,
"column_metadata": column_metadata,
"table_data": table_data
})
if not export_list:
if skipped_tables:
raise Exception("No tables found ({} empty tables skipped)".format(skipped_tables))
raise Exception("No tables found")
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
parse_options = {}
(core) support python3 in grist-core, and running engine via docker and/or gvisor Summary: * Moves essential plugins to grist-core, so that basic imports (e.g. csv) work. * Adds support for a `GRIST_SANDBOX_FLAVOR` flag that can systematically override how the data engine is run. - `GRIST_SANDBOX_FLAVOR=pynbox` is "classic" nacl-based sandbox. - `GRIST_SANDBOX_FLAVOR=docker` runs engines in individual docker containers. It requires an image specified in `sandbox/docker` (alternative images can be named with `GRIST_SANDBOX` flag - need to contain python and engine requirements). It is a simple reference implementation for sandboxing. - `GRIST_SANDBOX_FLAVOR=unsandboxed` runs whatever local version of python is specified by a `GRIST_SANDBOX` flag directly, with no sandboxing. Engine requirements must be installed, so an absolute path to a python executable in a virtualenv is easiest to manage. - `GRIST_SANDBOX_FLAVOR=gvisor` runs the data engine via gvisor's runsc. Experimental, with implementation not included in grist-core. Since gvisor runs on Linux only, this flavor supports wrapping the sandboxes in a single shared docker container. * Tweaks some recent express query parameter code to work in grist-core, which has a slightly different version of express (smoke test doesn't catch this since in Jenkins core is built within a workspace that has node_modules, and wires get crossed - in a dev environment the problem on master can be seen by doing `buildtools/build_core.sh /tmp/any_path_outside_grist`). The new sandbox options do not have tests yet, nor does this they change the behavior of grist servers today. They are there to clean up and consolidate a collection of patches I've been using that were getting cumbersome, and make it easier to run experiments. I haven't looked closely at imports beyond core. Test Plan: tested manually against regular grist and grist-core, including imports Reviewers: alexmojaki, dsagal Reviewed By: alexmojaki Differential Revision: https://phab.getgrist.com/D2942
3 years ago
return parse_options, export_list
# This change was initially introduced in https://phab.getgrist.com/D2145
# Monkey-patching done in https://phab.getgrist.com/D2965
# to move towards normal dependency management
@staticmethod
def from_xlrdcell(xlrd_cell, sheet, col, row):
from messytables.excel import (
XLS_TYPES, StringType, DateType, InvalidDateError, xlrd, time, datetime, XLSCell
)
value = xlrd_cell.value
cell_type = XLS_TYPES.get(xlrd_cell.ctype, StringType())
if cell_type == DateType(None):
# Try-catch added by Dmitry, to avoid failing even if we see a date we can't handle.
try:
if value == 0:
raise InvalidDateError
year, month, day, hour, minute, second = \
xlrd.xldate_as_tuple(value, sheet.book.datemode)
if (year, month, day) == (0, 0, 0):
value = time(hour, minute, second)
else:
value = datetime(year, month, day, hour, minute, second)
except Exception:
# Keep going, and we'll just interpret the date as a number.
pass
messy_cell = XLSCell(value, type=cell_type)
messy_cell.sheet = sheet
messy_cell.xlrd_cell = xlrd_cell
messy_cell.xlrd_pos = (row, col) # necessary for properties, note not (x,y)
return messy_cell
messytables.excel.XLSCell.from_xlrdcell = from_xlrdcell