From 37dbc93c335dcf7171b8eedbac4c0a98e57ca2ae Mon Sep 17 00:00:00 2001 From: FaresSalem Date: Sun, 29 Mar 2020 19:13:49 +0200 Subject: [PATCH] Adding Bioinformatics topic (#600) * Create README.md * Rename security/HW Security/README.md to security/hardware_security/README.md * Rearranging files * Rearranging files * Delete sok-eternal-war-in-memory.pdf * Moving sok-eternal-war-in-memory.pdf * Fix dead link Updating the link for "Internet Census via Insecure Routers" * Add Hardware Security subsection * Add Bioinformatics research area * fix the Shouji paper link --- bioinformatics/README.md | 6 ++++++ 1 file changed, 6 insertions(+) create mode 100644 bioinformatics/README.md diff --git a/bioinformatics/README.md b/bioinformatics/README.md new file mode 100644 index 0000000..f7aed44 --- /dev/null +++ b/bioinformatics/README.md @@ -0,0 +1,6 @@ +Bioinformatics +=========== +## Sequence Analysis +* [SneakySnake: A Fast and Accurate Universal Genome Pre-Alignment Filter for CPUs, GPUs, and FPGAs (2019)](https://arxiv.org/abs/1910.09020v2) +* [Shouji: a fast and efficient pre-alignment filter for sequence alignment (2019)](https://arxiv.org/ftp/arxiv/papers/1809/1809.07858.pdf) +* [Shifted Hamming distance: a fast and accurate SIMD-friendly filter to accelerate alignment verification in read mapping (2015)](https://doi.org/10.1093/bioinformatics/btu856) \ No newline at end of file