import * as BaseView from 'app/client/components/BaseView'; import {GristDoc} from 'app/client/components/GristDoc'; import {sortByXValues} from 'app/client/lib/chartUtil'; import {Delay} from 'app/client/lib/Delay'; import {Disposable} from 'app/client/lib/dispose'; import {fromKoSave} from 'app/client/lib/fromKoSave'; import {loadPlotly, PlotlyType} from 'app/client/lib/imports'; import * as DataTableModel from 'app/client/models/DataTableModel'; import {ViewFieldRec, ViewSectionRec} from 'app/client/models/DocModel'; import {reportError} from 'app/client/models/errors'; import {KoSaveableObservable, ObjObservable} from 'app/client/models/modelUtil'; import {SortedRowSet} from 'app/client/models/rowset'; import {cssRow} from 'app/client/ui/RightPanel'; import {squareCheckbox} from 'app/client/ui2018/checkbox'; import {colors, vars} from 'app/client/ui2018/cssVars'; import {linkSelect, select} from 'app/client/ui2018/menus'; import {nativeCompare} from 'app/common/gutil'; import {Events as BackboneEvents} from 'backbone'; import {dom, DomElementArg, makeTestId, styled} from 'grainjs'; import * as ko from 'knockout'; import debounce = require('lodash/debounce'); import defaults = require('lodash/defaults'); import defaultsDeep = require('lodash/defaultsDeep'); import {Config, Data, Datum, ErrorBar, Layout, LayoutAxis, Margin} from 'plotly.js'; let Plotly: PlotlyType; // When charting multiple series based on user data, limit the number of series given to plotly. const MAX_SERIES_IN_CHART = 100; const testId = makeTestId('test-chart-'); interface ChartOptions { multiseries?: boolean; lineConnectGaps?: boolean; lineMarkers?: boolean; invertYAxis?: boolean; logYAxis?: boolean; // If "symmetric", one series after each Y series gives the length of the error bars around it. If // "separate", two series after each Y series give the length of the error bars above and below it. errorBars?: 'symmetric' | 'separate'; } // tslint:disable:no-console // We use plotly's Datum to describe the type of values in cells. Cells may not match this // perfectly, but it's helpful for type-checking anyway. type RowPropGetter = (rowId: number) => Datum; // We convert Grist data to a list of Series first, from which we then construct Plotly traces. interface Series { label: string; // Corresponds to the column name. group?: Datum; // The group value, when grouped. values: Datum[]; } function getSeriesName(series: Series, haveMultiple: boolean) { if (!series.group) { return series.label; } else if (haveMultiple) { return `${series.group} \u2022 ${series.label}`; // the unicode character is "black circle" } else { return String(series.group); } } // The output of a ChartFunc. Normally it just returns one or more Data[] series, but sometimes it // includes layout information: e.g. a "Scatter Plot" returns a Layout with axis labels. interface PlotData { data: Data[]; layout?: Partial; config?: Partial; } // Convert a list of Series into a set of Plotly traces. type ChartFunc = (series: Series[], options: ChartOptions) => PlotData; // Helper for converting numeric Date/DateTime values (seconds since Epoch) to JS Date objects for // use with plotly. function dateGetter(getter: RowPropGetter): RowPropGetter { return (r: number) => { // 0's will turn into nulls, and non-numbers will turn into NaNs and then nulls. This prevents // Plotly from including 1970-01-01 onto X axis, which usually makes the plot useless. const val = (getter(r) as number) * 1000; // Plotly recommends using strings for dates rather than Date objects or timestamps. They are // interpreted more consistently. See https://github.com/plotly/plotly.js/issues/1532#issuecomment-290420534. return val ? new Date(val).toISOString() : null; }; } /** * ChartView component displays created charts. */ export class ChartView extends Disposable { public viewPane: Element; // These elements are defined in BaseView, from which we inherit with some hackery. protected viewSection: ViewSectionRec; protected sortedRows: SortedRowSet; protected tableModel: DataTableModel; private _chartType: ko.Observable; private _options: ObjObservable; private _chartDom: HTMLElement; private _update: () => void; private _resize: () => void; public create(gristDoc: GristDoc, viewSectionModel: ViewSectionRec) { BaseView.call(this as any, gristDoc, viewSectionModel); this._chartDom = this.autoDispose(this.buildDom()); this._resize = this.autoDispose(Delay.untilAnimationFrame(this._resizeChart, this)); // Note that .viewPane is used by ViewLayout to insert the actual DOM into the document. this.viewPane = this._chartDom; this._chartType = this.viewSection.chartTypeDef; this._options = this.viewSection.optionsObj; this._update = debounce(() => this._updateView(), 0); this.autoDispose(this._chartType.subscribe(this._update)); this.autoDispose(this._options.subscribe(this._update)); this.autoDispose(this.viewSection.viewFields().subscribe(this._update)); this.listenTo(this.sortedRows, 'rowNotify', this._update); this.autoDispose(this.sortedRows.getKoArray().subscribe(this._update)); } public prepareToPrint(onOff: boolean) { Plotly.relayout(this._chartDom, {}).catch(reportError); } protected onTableLoaded() { (BaseView.prototype as any).onTableLoaded.call(this); this._update(); } protected onResize() { this._resize(); } protected buildDom() { return dom('div.chart_container', testId('container')); } private listenTo(...args: any[]): void { /* replaced by Backbone */ } private async _updateView() { if (this.isDisposed()) { return; } const chartFunc = chartTypes[this._chartType()]; if (typeof chartFunc !== 'function') { console.warn("Unknown trace type %s", this._chartType()); return; } const fields: ViewFieldRec[] = this.viewSection.viewFields().all(); const rowIds: number[] = this.sortedRows.getKoArray().peek() as number[]; const series: Series[] = fields.map((field) => { // Use the colId of the displayCol, which may be different in case of Reference columns. const colId: string = field.displayColModel.peek().colId.peek(); const getter = this.tableModel.tableData.getRowPropFunc(colId) as RowPropGetter; const pureType = field.displayColModel().pureType(); const fullGetter = (pureType === 'Date' || pureType === 'DateTime') ? dateGetter(getter) : getter; return { label: field.label(), values: rowIds.map(fullGetter), }; }); const options: ChartOptions = this._options.peek() || {}; let plotData: PlotData = {data: []}; if (!options.multiseries) { plotData = chartFunc(series, options); } else if (series.length > 1) { // We need to group all series by the first column. const nseries = groupSeries(series[0].values, series.slice(1)); // This will be in the order in which nseries Map was created; concat() flattens the arrays. for (const gSeries of nseries.values()) { const part = chartFunc(gSeries, options); part.data = plotData.data.concat(part.data); plotData = part; } } Plotly = Plotly || await loadPlotly(); // Loading plotly is asynchronous and it may happen that the chart view had been disposed in the // meantime and cause error later. So let's check again. if (this.isDisposed()) { return; } const layout: Partial = defaultsDeep(plotData.layout, getPlotlyLayout(options)); const config: Partial = {...plotData.config, displayModeBar: false}; // react() can be used in place of newPlot(), and is faster when updating an existing plot. await Plotly.react(this._chartDom, plotData.data, layout, config); this._resizeChart(); } private _resizeChart() { if (this.isDisposed() || !Plotly) { return; } Plotly.Plots.resize(this._chartDom); } } /** * Group the given array of series by a column of group values. The groupColumn and each of the * series should be arrays of the same length. * * For example, if groupColumn has CompanyID, and valueSeries contains [Date, Employees, Revenues] * (each an array of values), then returns a map mapping each CompanyID to the array [Date, * Employees, Revenue], each value of which is itself an array of values for that CompanyID. */ function groupSeries(groupColumn: T[], valueSeries: Series[]): Map { const nseries = new Map(); // Limit the number if group values so as to limit the total number of series we pass into // Plotly. Too many series are impossible to make sense of anyway, and can hang the browser. // TODO: When not all data is shown, we should probably show some indicator, similar to when // OnDemand data is truncated. const maxGroups = Math.floor(MAX_SERIES_IN_CHART / valueSeries.length); const groupValues: T[] = [...new Set(groupColumn)].sort().slice(0, maxGroups); // Set up empty lists for each group. for (const group of groupValues) { nseries.set(group, valueSeries.map((s: Series) => ({ label: s.label, group, values: [] }))); } // Now fill up the lists. for (let row = 0; row < groupColumn.length; row++) { const group = groupColumn[row]; const series: Series[]|undefined = nseries.get(group); if (series) { for (let i = 0; i < valueSeries.length; i++) { series[i].values.push(valueSeries[i].values[row]); } } } return nseries; } // If errorBars are requested, removes error bar series from the 'series' list, adding instead a // mapping from each main Y series to the corresponding plotly ErrorBar object. function extractErrorBars(series: Series[], options: ChartOptions): Map { const result = new Map(); if (options.errorBars) { // We assume that series is of the form [X, Y1, Y1-bar, Y2, Y2-bar, ...] (if "symmetric") or // [X, Y1, Y1-below, Y1-above, Y2, Y2-below, Y2-above, ...] (if "separate"). for (let i = 1; i < series.length; i++) { result.set(series[i], { type: 'data', symmetric: (options.errorBars === 'symmetric'), array: series[i + 1] && series[i + 1].values, arrayminus: (options.errorBars === 'separate' ? series[i + 2] && series[i + 2].values : undefined), thickness: 1, width: 3, }); series.splice(i + 1, (options.errorBars === 'symmetric' ? 1 : 2)); } } return result; } // Getting an ES6 class to work with old-style multiple base classes takes a little hacking. defaults(ChartView.prototype, BaseView.prototype); Object.assign(ChartView.prototype, BackboneEvents); function getPlotlyLayout(options: ChartOptions): Partial { // Note that each call to getPlotlyLayout() creates a new layout object. We are intentionally // avoiding reuse because Plotly caches too many layout calculations when the object is reused. const yaxis: Partial = {}; if (options.logYAxis) { yaxis.type = 'log'; } if (options.invertYAxis) { yaxis.autorange = 'reversed'; } return { // Margins include labels, titles, legend, and may get auto-expanded beyond this. margin: { l: 50, r: 50, b: 40, // Space below chart which includes x-axis labels t: 30, // Space above the chart (doesn't include any text) pad: 4 } as Margin, legend: { // Translucent background, so chart data is still visible if legend overlaps it. bgcolor: "#FFFFFF80", }, yaxis, }; } /** * Build the DOM for side-pane configuration options for a Chart section. */ export function buildChartConfigDom(section: ViewSectionRec) { if (section.parentKey() !== 'chart') { return null; } const optionsObj = section.optionsObj; return [ cssRow( select(fromKoSave(section.chartTypeDef), [ {value: 'bar', label: 'Bar Chart', icon: 'ChartBar' }, {value: 'pie', label: 'Pie Chart', icon: 'ChartPie' }, {value: 'area', label: 'Area Chart', icon: 'ChartArea' }, {value: 'line', label: 'Line Chart', icon: 'ChartLine' }, {value: 'scatter', label: 'Scatter Plot', icon: 'ChartLine' }, {value: 'kaplan_meier', label: 'Kaplan-Meier Plot', icon: 'ChartKaplan'}, ]), testId("type"), ), dom.maybe((use) => use(section.chartTypeDef) !== 'pie', () => [ // These options don't make much sense for a pie chart. cssCheckboxRow('Group by first column', optionsObj.prop('multiseries'), testId('multiseries')), cssCheckboxRow('Invert Y-axis', optionsObj.prop('invertYAxis')), cssCheckboxRow('Log scale Y-axis', optionsObj.prop('logYAxis')), ]), dom.maybe((use) => use(section.chartTypeDef) === 'line', () => [ cssCheckboxRow('Connect gaps', optionsObj.prop('lineConnectGaps')), cssCheckboxRow('Show markers', optionsObj.prop('lineMarkers')), ]), dom.maybe((use) => ['line', 'bar'].includes(use(section.chartTypeDef)), () => [ cssRow(cssLabel('Error bars'), dom('div', linkSelect(fromKoSave(optionsObj.prop('errorBars')), [ {value: '', label: 'None'}, {value: 'symmetric', label: 'Symmetric'}, {value: 'separate', label: 'Above+Below'}, ], {defaultLabel: 'None'})), testId('error-bars'), ), dom.domComputed(optionsObj.prop('errorBars'), (value: ChartOptions["errorBars"]) => value === 'symmetric' ? cssRowHelp('Each Y series is followed by a series for the length of error bars.') : value === 'separate' ? cssRowHelp('Each Y series is followed by two series, for top and bottom error bars.') : null ), ]), ]; } function cssCheckboxRow(label: string, value: KoSaveableObservable, ...args: DomElementArg[]) { return dom('label', cssRow.cls(''), cssLabel(label), squareCheckbox(fromKoSave(value), ...args), ); } function basicPlot(series: Series[], options: ChartOptions, dataOptions: Partial): PlotData { trimNonNumericData(series); const errorBars = extractErrorBars(series, options); return { data: series.slice(1).map((line: Series): Data => ({ name: getSeriesName(line, series.length > 2), x: series[0].values, y: line.values, error_y: errorBars.get(line), ...dataOptions, })), layout: { xaxis: series.length > 0 ? {title: series[0].label} : {}, // Include yaxis title for a single y-value series only (2 series total); // If there are fewer than 2 total series, there is no y-series to display. // If there are multiple y-series, a legend will be included instead, and the yaxis title // is less meaningful, so omit it. yaxis: series.length === 2 ? {title: series[1].label} : {}, }, }; } // Most chart types take a list of series and then use the first series for the X-axis, and each // subsequent series for their Y-axis values, allowing for multiple lines on the same plot. // Each series should have the form {label, values}. export const chartTypes: {[name: string]: ChartFunc} = { // TODO There is a lot of code duplication across chart types. Some refactoring is in order. bar(series: Series[], options: ChartOptions): PlotData { return basicPlot(series, options, {type: 'bar'}); }, line(series: Series[], options: ChartOptions): PlotData { sortByXValues(series); return basicPlot(series, options, { type: 'scatter', connectgaps: options.lineConnectGaps, mode: options.lineMarkers ? 'lines+markers' : 'lines', }); }, area(series: Series[], options: ChartOptions): PlotData { sortByXValues(series); return basicPlot(series, options, { type: 'scatter', fill: 'tozeroy', line: {shape: 'spline'}, }); }, scatter(series: Series[], options: ChartOptions): PlotData { return basicPlot(series.slice(1), options, { type: 'scatter', mode: 'text+markers', text: series[0].values as string[], textposition: "bottom center", }); }, pie(series: Series[]): PlotData { let line: Series; if (series.length === 0) { return {data: []}; } if (series.length > 1) { trimNonNumericData(series); line = series[1]; } else { // When there is only one series of labels, simply count their occurrences. line = {label: 'Count', values: series[0].values.map(() => 1)}; } return { data: [{ type: 'pie', name: getSeriesName(line, false), // nulls cause JS errors when pie charts resize, so replace with blanks. // (a falsy value would cause plotly to show its index, like "2" which is more confusing). labels: series[0].values.map(v => (v == null || v === "") ? "-" : v), values: line.values, }] }; }, kaplan_meier(series: Series[]): PlotData { // For this plot, the first series names the category of each point, and the second the // survival time for that point. We turn that into as many series as there are categories. if (series.length < 2) { return {data: []}; } const newSeries = groupIntoSeries(series[0].values, series[1].values); return { data: newSeries.map((line: Series): Data => { const points = kaplanMeierPlot(line.values as number[]); return { type: 'scatter', mode: 'lines', line: {shape: 'hv'}, name: getSeriesName(line, false), x: points.map(p => p.x), y: points.map(p => p.y), } as Data; }) }; }, }; /** * Assumes a list of series of the form [xValues, yValues1, yValues2, ...]. Remove from all series * those points for which all of the y-values are non-numeric (e.g. null or a string). */ function trimNonNumericData(series: Series[]): void { const values = series.slice(1).map((s) => s.values); for (const s of series) { s.values = s.values.filter((_, i) => values.some(v => typeof v[i] === 'number')); } } // Given two parallel arrays, returns an array of series of the form // {label: category, values: array-of-values} function groupIntoSeries(categoryList: Datum[], valueList: Datum[]): Series[] { const groups = new Map(); for (const [i, cat] of categoryList.entries()) { if (!groups.has(cat)) { groups.set(cat, []); } groups.get(cat).push(valueList[i]); } return Array.from(groups, ([label, values]) => ({label, values})); } // Given a list of survivalValues, returns a list of {x, y} pairs for the kaplanMeier plot. function kaplanMeierPlot(survivalValues: number[]): Array<{x: number, y: number}> { // First get a distribution of survivalValue -> count. const dist = new Map(); for (const v of survivalValues) { dist.set(v, (dist.get(v) || 0) + 1); } // Sort the distinct values. const distinctValues = Array.from(dist.keys()); distinctValues.sort(nativeCompare); // Now generate plot values, with 'x' for survivalValue and 'y' the number of surviving points. let y = survivalValues.length; const points = [{x: 0, y}]; for (const x of distinctValues) { y -= dist.get(x)!; points.push({x, y}); } return points; } const cssLabel = styled('div', ` flex: 1 0 0px; margin-right: 8px; font-weight: initial; /* negate bootstrap */ color: ${colors.dark}; overflow: hidden; text-overflow: ellipsis; `); const cssRowHelp = styled(cssRow, ` font-size: ${vars.smallFontSize}; color: ${colors.slate}; `);